Publication

  • 67

    Publications

  • 31

    NGS

  • 35

    Microarray

  • 40

    Co-Authored

Year Wise Distribution

  • Co-Authored vs Acknowledged
  • Key Applications (NGS)

YEARTitleApplicationPubmed LinkInstitute NameCo-authorship/ Author/AcknowledgementJournal nameApplication subtype  
2017 - MayTITLE: miRNA signatures can predict acute liver failure in hepatitis E infected pregnant females.

Author: Trehanpati N, Sehgal R, Patra S, Vyas A, Vasudevan M, Khosla R, Khanam A, Kumar G1, Maiwall R, Ramakrishna G, Kottilil S, Sarin SK

DOI: 10.1016/j.heliyon.2017.e00287
NGSLinkILBS, Department of molecular & Cellular Medicine
Co-AuthorshipElsevier Heliyonsmall RNA
2017 - April
TITLE: Interaction of a Common Painkiller Piroxicam and Copper-piroxicam with Chromatin Causes Structural Alterations Accompanied by Modulation at the Epigenomic/Genomic level

Author: Sathi Goswamia, Sulagna Sanyalb, Payal Chakrabortyc, Chandrima Dasb, Munna Sarkar

DOI: http://doi.org/10.1016/j.bbagen.2017.04.006
Microarray
LinkSaha Institute of Nuclear Physics
Co-Authorship
Biochimica et Biophysica Acta (BBA) - General Subjects
Microarray
2017
"TITLE: Alternate splicing of transcripts shape macrophage response to Mycobacterium tuberculosis infection


Atuthor: Haroon Kalam, Mary F. Fontana, Dhiraj Kumar

DOI: http://dx.doi.org/10.1371/journal.ppat.1006236"
NGS
LinkICGEB, NEW DELHI
Acknowledgement
PLOS Pathogens
RNA Seq
2017
"TITLE: Gene regulatory networking reveals the molecular cue to lysophosphatidic acid-induced metabolic adaptations in ovarian cancer cells.


Author: Upasana Ray, Shreya Roy Chowdhury, Madavan Vasudevan, Kiran Bankar, Susanta Roychoudhury,Sib Sankar Roy


PMCID: 28236660"
NGS
LinkIICB, Cell Biology and Physiology Division
Co-authorship
Molecular Onclogy
RNA Seq
2017
"TITLE: EpCAM+ Liver Cancer Stem-Like Cells Exhibiting Autocrine Wnt Signaling Potentially Originate in Cirrhotic Patients.


Author: Khosla R, Rastogi A, Ramakrishna G, Pamecha V, Mukhopadhyay A, Vasudevan M, Sarin SK, Trehanpati N

PMCID: 28176469"
NGS
LinkILBS, Department of molecular & Cellular Medicine
Co-authorship
Stem Cell Translational Medicine
RNA Seq
2017
"TITLE: Age-related changes in gene expression patterns of immature and aged rat primordial follicles

Author: Vijayakumar Govindaraj, Harshini Krishnagiri, Payal Chakraborty, Madavan Vasudevan, A. Jagannadha Rao"
Microarray
LinkIISc, Department of Biochemistry
Co-authorship
Taylore & Francis Online
Gene Expression
2016
"TITLE: Nucleolin-aptamer therapy in retinoblastoma: molecular changes and mass spectrometry-based imaging.

Author: Nithya Subramanian, Amitava Srimany, Jagat R Kanwar, Rupinder K Kanwar, Balachandran Akilandeswari, Pukhraj Rishi, Vikas Khetan, Madavan Vasudevan, Thalappil Pradeep and Subramanian Krishnakumar

PMID: 27574784"
Microarray
LinkVision Research Foundation
Co-authorship
"Molecular Therapy- Nucleic Acid
(Nature)"
Gene Expression
2016
"TITLE: Transcriptome Analysis of the Response to NaCl in Suaeda maritima Provides an Insight into Salt Tolerance Mechanisms in Halophytes


Author: Gharat SA , Parmar S , Tambat S, Vasudevan M, Shaw BP

PMID: 27682829"
NGS
LinkILS Bhubaneswar
Co-authorship
PLoS One
RNA Seq
2016
"TITLE: Transcriptional changes during ovule development in two genotypes of litchi (Litchi chinensis Sonn.) with contrast in seed size

Author: Ashish K. Pathak, Sudhir P. Singh, YogeshGupta, Anoop K. S.Gurjar, Shrikant S. Mantri & RakeshTuli

PMCID: PMC5099886"
NGS
LinkNational Agri-Food Biotechnology Institute
Acknowledgement
Nature- Scientific Reports
RNA Seq
2016
"Title: The plant alkaloid chelerythrine binds to chromatin, alters H3K9Ac and modulates global gene expression

Author: Amrita Banerjee, Sulagna Sanyala, Shreyasi Dutta, Payal Chakraborty, Prajna Paramita Das, Kuladip Jana, Madavan Vasudevan, Chandrima Das & Dipak Dasgupta

PMID: 27494525"
Microarray
LinkBiophysics and Structural Genomics Division, Saha Institute of Nuclear Physics
Co-authorship
Journal of Biomolecular Structure and Dynamics
Gene Expression
2016
"Title: Notch1-MAPK Signaling Axis Regulates CD133+ Cancer Stem Cell-Mediated Melanoma Growth and Angiogenesis.

Author: Dhiraj Kumar, Santosh Kumar, Mahadeo Gorain, Deepti Tomar, Harshal S. Patil, N.N.V. Radharani, T.V.S. Kumar, Tushar V. Patil, H.V. Thulasiram, Gopal C. Kundu

PMID: 27476721"
Microarray
LinkLaboratory of Tumor Biology, Angiogenesis and Nanomedicine Research, National Centre for Cell Science (NCCS)
Acknowledgement
Journal of Investigative Dermatology
Gene Expression
2016
"Title: De novo Assembly of Leaf Transcriptome in the Medicinal Plant Andrographis paniculata

Author: Neeraja Cherukupalli, Mayur Divate, Suresh R. Mittapelli, Venkateswara R. Khareedu and Dashavantha R. Vudem*

DOI in Frontier: http://dx.doi.org/10.3389/fpls.2016.01203"
NGS
LinkCentre for Plant Molecular Biology, Osmania University, Hyderabad
Co-authorship
Frontiers in Plant Science
RNA Seq
2016"Title: Nucleolin-aptamer therapy in retinoblastoma: molecular changes and mass spectrometry-based imaging.


Author: Nithya Subramanian, Amitava Srimany, Jagat R Kanwar, Rupinder K Kanwar, Balachandran Akilandeswari, Pukhraj Rishi, Vikas Khetan, Madavan Vasudevan, Thalappil Pradeep and Subramanian Krishnakumar

PMID: 27574784"
Microarray
LinkVision Research Foundation
Co-authorship
"Molecular Therapy- Nucleic Acid
(Nature)"
Gene Expression
2016
"Title : Draft Genome Sequence of Halobacillus sp. Strain KGW1, a Moderately Halophilic and Alkaline Protease-Producing Bacterium Isolated from the Rhizospheric Region of Phragmites karka from Chilika Lake, Odisha, India.

Author: Panda AN1, Mishra SR1, Ray L1, Sahu N1, Acharya A2, Jadhao S2, Suar M1, Adhya TK1, Rastogi G3, Pattnaik AK3, Raina V4.

PMID: 27365341"

NGS
LinkSchool of Biotechnology, KIIT University, Bhubaneswar, Odisha, India.
Co-authorship
Genome Announcements
DNA Seq
2016"Title : Draft Genome Sequence of Pseudomonas sp. Strain BMS12, a Plant Growth-Promoting and Protease-Producing Bacterium, Isolated from the Rhizosphere Sediment of Phragmites karka of Chilika Lake, India.

Author : Samir R. Mishra,a Ananta Narayan Panda,a Lopamudra Ray,a Neha Sahu,a Gayatri Mishra,c Sudhir Jadhao,c Mrutyunjay Suar,a Tapan Kumar Adhya,a Gurdeep Rastogi,b Ajit Kumar Pattnaik,b Vishakha Rainaa

PMID: 27365340"
NGS
LinkSchool of Biotechnology, KIIT University, Bhubaneswar
Co-authorship
Genome Announcements
DNA Seq
2016"Title : Draft Genome Sequence of Acinetobacter sp. Strain BMW17, a Cellulolytic and Plant Growth-Promoting Bacterium Isolated from the Rhizospheric Region of Phragmites karka of Chilika Lake, India

Author : Samir R. Mishra,a Lopamudra Ray,a Ananta Narayan Panda,a Neha Sahu,a Sonal S. Xess,c Sudhir Jadhao,c Mrutyunjay Suar,a Tapan Kumar Adhya,a Gurdeep Rastogi,b Ajit Kumar Pattnaik,b Vishakha Rainaa

PMID : 27365343"
NGSLinkSchool of Biotechnology, KIIT University, Bhubaneswar
Co-authorshipGenome Announcements
DNA Seq
2016"Title: P/CAF mediates PAX3-FOXO1 dependent oncogenesis in alveolar rhabdomyosarcoma

Author: Narendra Bharathy,Sudha Suriyamurthy,Vinay Kumar Rao,Jin Rong Ow,Huey Jin Lim,
Payal Chakraborty,Madavan Vasudevan,Chetan Anil Dhamne,Kenneth Tou En Chang,Victor Lee Kwan Min,
Tapas K. Kundu,Reshma Taneja

PMID: 27453350"
Microarray
LinkMolecular Biology and Genetics Unit, Jawaharlal Nehru Centre for Advanced Scientific Research, Bangalore
Co-authorshipThe Journal of Pathology
Gene Expression
2016Title : Streptococcus uberis ST439 and ST475 induce differential inflammatory responses in a mouse intramammary infection model

Author :Susweta Das Mitra, Bibek Ranjan Shome, Bhuvana Mani, D. Velu, Apala Banerjee, Kiran Bankar, Sankar Kumar Ghosh, Sandip Santra, K.P. Suresh, Habibur Rahman



PMID: 27039025


NGSLinkICAR-National Institute of Veterinary Epidemiology and Disease Informatics (NIVEDI)Co-authorshipGENEDNA Seq
2016Title : Draft Genome Sequence of Acinetobacter baumannii IITR88, a Bacterium Degrading Indoles and Other Aromatic Compounds

Author : Raj Kumar Regar, Vivek Kumar Gaur, Gayatri Mishra, Sudhir Jadhao, Mohan Kamthan, Natesan Manickam



PMID: 26941147


NGSLinkCSIR-Indian Institute of Toxicology Research (IITR)Co-authorshipGenome AnnouncementsDNA Seq
2016Title : Draft Genome Sequence of Alcaligenes faecalis Strain IITR89, an Indole-Oxidizing Bacterium

Author : Raj Kumar Regar, Vivek Kumar Gaur, Gayatri Mishra, Sudhir Jadhao, Mohan Kamthan, Natesan Manickam



PMID: 26941148


NGSLinkCSIR-Indian Institute of Toxicology Research (IITR)Co-authorshipGenome AnnouncementsDNA Seq
2016Title : Clinico-Pathological Association of Delineated miRNAs in Uveal Melanoma with Monosomy 3/Disomy 3 Chromosomal Aberrations

Author : Nalini Venkatesan, Jagat Kanwar, Perinkulam Ravi Deepa, Vikas Khetan, Tamsyn M. Crowley, Rajeswari Raguraman, Ganesan Sugneswari, Pukhraj Rishi, Viswanathan Natarajan, Jyotirmay Biswas, Subramanian Krishnakumar



PMID: 26812476


MicroarrayLinkSankara NethralayaAcknowledgementPLoS OnemiRNA
2016Title : Draft Genome Sequence of a Clinically Isolated Extensively Drug-Resistant Pseudomonas aeruginosa Strain

Author :Bhavani Manivannan, Niranjana Mahalingam, Sudhir Jadhao, Amrita Mishra, Pravin Nilawe, Bulagonda Eswarappa Pradeep



PMID: 27013045


NGSLinkSri Sathya Sai Institute of Higher Learning, Prasanthi NilayamCo-authorshipGenome AnnouncementsDNA Seq
2016Title : Draft Genome Sequences of Two Extensively Drug-Resistant Acinetobacter baumannii Strains Isolated from Pus Samples

Author : Niranjana Mahalingam, Bhavani Manivannan, Sudhir Jadhao, Gayathri Mishra, Pravin Nilawe, Bulagonda Eswarappa Pradeep



PMID: 27013044


NGSLinkSri Sathya Sai Institute of Higher Medical Sciences (Prasanthigram)Co-authorshipGenome AnnouncementsDNA Seq
2016Title : Gene expression profiling reveals Nef induced deregulation of lipid metabolism in HIV-1 infected T cells

Author : Surya Shrivastava, Jay Trivedi, Debashis Mitra



PMID: 26915805


MicroarrayLinkNational Centre for Cell Science(Pune)AcknowledgementBiochemical and Biophysical Research CommunicationsGene Expression
2015Title : Mycobacterium tuberculosis WhiB3 responds to vacuolar pH- induced changes in mycothiol redox potential to modulate phagosomal maturation and virulence

Author : Mansi Mehta,Raju. S. Rajmani and Amit Singh



PMID: 26637353


MicroarrayLinkIndian Institute of ScienceAcknowledgementThe Journal of Biological ChemistryGene Expression
2015Title : Esophageal Cancer Epigenomics and Integrome Analysis of Genome-Wide Methylation and Expression in High Risk Northeast Indian Population

Author : Singh Virendra, Singh Laishram Chandreshwor, Vasudevan Madavan, Chattopadhyay Indranil, Borthakar Bibhuti Bhusan, Rai Avdhesh Kumar, Phukan Rup Kumar, Sharma Jagannath, Mahanta Jagadish, Kataki Amal Chandra, Kapur Sujala, and Saxena Sunita



PMID: 26496483


MicroarrayLinkNational Institute of Pathology (ICMR) , New DelhiCo-authorshipOMICSMethylation / Gene Expression / Integrome
2015Title : Inhibition of p300 Lysine Acetyltransferase activity by Luteolin reduces tumor growth in head and neck squamous cell carcinoma (HNSCC) xenograft mouse model.

Author : Ruthrotha B. Selvi, Amrutha Swaminathan, Snehajyoti Chatterjee, Muthu K. Shanmugam, Feng Li, Gowsica B. Ramakrishnan, Kodappully Sivaraman Siveen, Arunachalam Chinnathambi, M. Emam Zayed, Sulaiman Ali Alharbi, Jeelan Basha, Akshay Bhat, Madavan Vasudevan, Arunasalam Dharmarajan, Gautam Sethi and Tapas K. Kundu



PMID: 26517526


MicroarrayLinkJawaharlal Nehru Centre for Advanced Scientific ResearchCo-authorshipOncotargetmiRNA
2015Title : Dengue NS3, an RNAi suppressor, modulates the human miRNA pathways through its interacting partner

Author : Pavan Kumar Kakumani, K S Rajgokul, Sanket Singh Ponia, Inderjeet Kaur, Srikrishna Mahanty, Guruprasad R Medigeshi, Akhil C Banerjea, Arun Prasad Chopra, Pawan Malhotra, Sunil Kumar Mukherjee, Raj K. Bhatnagar



PMID: 26221025


NGSLinkInternational Centre for Genetic Engineering and BiotechnologyAcknowledgementBiochemical Journalsmall RNA
2015Title : Identification and Characteristics of microRNAs from Army Worm, Spodoptera frugiperda Cell Line Sf21

Author : Pavan Kumar Kakumani, Mahendran Chinnappan, Ashok K. Singh, Pawan Malhotra, Sunil K. Mukherjee, Raj K. Bhatnagar



PMID: 25693181


NGSLinkInternational Center for Genetic Engineering and BiotechnologyAcknowledgementPLoS Onesmall RNA
2015Title : De novo transcriptome assembly and analysis of Sf21 cells using illumina paired end sequencing

Author : Pavan Kumar Kakumani, Rohit Shukla, Vivek N. Todur, Pawan Malhotra, Sunil K. Mukherjee, Raj K. Bhatnagar


PMID: 26290335


NGSLinkInternational Centre for Genetic Engineering and BiotechnologyCo-authorshipBioMed CentralRNA Seq
2015Title : Ameliorated denovo transcriptome assembly using Illumina paired end sequence data with trinity assembler

Author : Kiran Gopinath Bankar, Vivek Nagaraj Todur, Rohit Nandan Shukla, Madavan Vasudevan


PMID: 26484285


NGSLinkBionividAuthorGenomics DataRNA Seq
2015Title : Global Gene Deregulations in FASN Silenced Retinoblastoma Cancer Cells: Molecular and Clinico-Pathological Correlations

Author : Manoharan Sangeetha, Perinkulam Ravi Deepa, Pukhraj Rishi, Vikas Khetan, Subramanian Krishnakumar



PMID: 25958981


MicroarrayLinkBirla Institute of Technology and ScienceAcknowledgementJournal of Cellular BiochemistrGene Expression
2015Title : Global insights into high temperature and drought stress regulated genes by RNA-Seq in economically important oilseed crop Brassica juncea

Author : Ankur R Bhardwaj, Gopal Joshi, Bharti Kukreja, Vidhi Malik, Priyanka Arora, Ritu Pandey, Rohit N Shukla, Kiran G Bankar, Surekha Katiyar-Agarwal, Shailendra Goel, Arun Jagannath, Amar Kumar and Manu Agarwal



PMID: 25604693


NGSLinkUniversity of DelhiCo-authorshipBMC Plant BiologyRNA Seq
2015Title : Environmental Metagenomics: The Data Assembly and Data Analysis Perspectives

Author : Vinay Kumar, S. S. Maitra, Rohit Nandan Shukla



PMID: NA


NGSLinkJawaharlal Nehru UniversityCo-authorshipJournal of The Institution of Engineers (India): Series AMetagenomics
2015Title : De Novo Assembly and Characterization of Stress Transcriptome in a Salinity-Tolerant Variety CS52 of Brassica juncea

Author : Rita Sharma, Manjari Mishra, Brijesh Gupta, Chirag Parsania, Sneh L. Singla-Pareek, Ashwani Pareek



PMID: 25970274


NGSLinkJawaharlal Nehru UniversityCo-authorshipPLoS OneRNA Seq
2015Title : Computational and in vitro Investigation of miRNA-Gene Regulations in Retinoblastoma Pathogenesis: miRNA Mimics Strategy

Author : Nalini Venkatesan, Perinkulam Ravi Deepa, Vikas Khetan, Subramanian Krishnakumar



PMID: 25983556


NGSLinkSankara NethralayaAcknowledgementBioinformatics and Biology Insightssmall RNA
2015Title : Recognition of chromatin by the plant alkaloid, ellipticine as a dual binder

Author : Amrita Banerjee, Sulagna Sanyal , Parijat Majumdera, Payal Chakraborty, Kuladip Jana, Chandrima Das, Dipak Dasgupta



PMID: 25960297


MicroarrayLinkSaha Institute of Nuclear PhysicsCo-authorshipBiochemical and Biophysical Research CommunicationsGene Expression
2015Title : Exploring Triacylglycerol Biosynthetic Pathway in Developing Seeds of Chia (Salvia hispanica L.): A Transcriptomic Approach

Author : Sreedhar R. V. , Priya Kumari, Sunny D. Rupwate, Ram Rajasekharan and Malathi Srinivasan



PMID: 25875809


NGSLinkCentral Food Technological Research InstituteAcknowledgementPLoS OneRNA Seq
2015Title : Identification of four functionally important microRNA families with contrasting differential expression profiles between drought-tolerant and susceptible rice leaf at vegetative stage.

Author : Boon Huat Cheah, Kalaivani Nadarajah, Mayur Dashrath Divate and Ratnam Wickneswari



PMID: 26369665


MicroarrayLinkSchool of Biotechnology and Bioscience, Faculty of Science and Technology, Universiti Kebangsaan MalaysiaCo-authorshipBioMed CentralmiRNA
2014Title :Anticancer drug mithramycin interacts with core histones: An additional mode of action of the DNA groove binder

Author : Amrita Banerjee, Sulagna Sanyal, Kirti K. Kulkarni, Kuladip Jana, Siddhartha Roy, Chandrima Das, Dipak Dasgupta


PMID: 25473595


MicroarrayLinkSaha Institute of Nuclear PhysicsCo-authorshipFEBS OpenbioGene Expression
2014Title : Global gene expression profiling data analysis reveals key gene families and biological processes inhibited by Mithramycin in sarcoma cell lines

Author : Kirti K. Kulkarni, Kiran Gopinath Bankar, Rohit Nandan Shukla, Chandrima Das, Amrita Banerjee, Dipak Dasgupta, Madavan Vasudevan



PMID: 26484141


MicroarrayLinkBionivid Technology Pvt Ltd., BangaloreAuthorGenomics DataGene Expression
2014Title : CARM1 regulates astroglial lineage through transcriptional regulation of Nanog and posttranscriptional regulation by miR92a.

Author : Ruthrotha Selvi B, Amrutha Swaminathan, Uma Maheshwari, Ananthamurthy , Nagabhushana, Rakesh Mishra and Tapas K Kundu



PMID: 25392304


MicroarrayLinkJawaharlal Nehru Centre for Advanced Scientific ResearchAcknowledgementMolecular Biology of The CellmiRNA
2014Title :Gene expression analysis of laminin‐1‐induced neurite outgrowth in human mesenchymal stem cells derived from bone marrow

Author : S. Mruthyunjaya,D. Parveen,Reecha D. Shah, Ravibhushan Godbole,Madavan Vasudevan,Padma Shastry



PMID: 24866321


MicroarrayLinkNational Centre for Cell ScienceCo-authorshipJournal Of Biomedical Materials Research. Part AGene Expression
2014Title : A new microarray platform for whole-genome expression profiling of Mycobacterium tuberculosis

Author : Balaji Venkataraman, Madavan Vasudevan, Amita Gupta



PMID: 24365110


MicroarrayLinkUniversity of Delhi South CampusCo-authorshipJournal Of Microbiological MethodsGene Expression
2014Title :De Novo Transcriptome Sequencing and Analysis of the Cereal Cyst Nematode,Heterodera avenae

Author : Mukesh Kumar, Nagavara Prasad Gantasala, Tanmoy Roychowdhury,Prasoon Kumar Thakur,Prakash Banaka,Rohit N. Shukla,Michael G. K. Jones and Uma Rao



PMID: 24802510


NGSLinkIndian Agricultural Research InstituteCo-authorshipPLoS OneRNA Seq
2014Title : Temporal expression profiling of novel Spodoptera litura nucleopolyhedrovirus encoded microRNAs upon infection of Sf21 cells.

Author : Nishtha Kharbanda, Sushil Kumar Jalali, Rakshit Ojha, and Raj K. Bhatnagar



PMID: 25481752


NGSLinkInternational Center for Genetic Engineering and BiotechnologyAcknowledgementJournal of General Virologysmall RNA
2014Title : Integrated Analysis of Dysregulated miRNA-gene Expression in HMGA2-silenced Retinoblastoma Cells

Author : Nalini Venkatesan, PR Deepa, Madavan Vasudevan , Vikas Khetan, Ashwin M Reddy and Subramanian Krishnakumar



PMID: 25232279


MicroarrayLinkSankara NethralayaCo-authorshipBioinformatics and Biology InsightsGene Expression
2014Title : Genome wide screening of RNAi factors of Sf21 cells reveal several novel pathway associated proteins.

Author : Subhanita Ghosh, Pavan Kumar Kakumani, Ajit Kumar, Pawan Malhotra, Sunil K Mukherjee and Raj K Bhatnagar



PMID: 25199785


NGSLinkInternational Centre for Genetic Engineering and BiotechnologyAcknowledgementBioMed Centralsmall RNA
2014Title : Dramatic changes in 67 miRNAs during initiation of first wave of spermatogenesis in Mus musculus testis: global regulatory insights generated by miRNA-mRNA network analysis.

Author : Sree S, Radhakrishnan K, Indu S, Kumar PG



PMID: 25122060


MicroarrayLinkRajiv Gandhi Center for BiotechnologyAcknowledgementBiology of ReproductionmiRNA
2014Title :Epigenetic response in mice mastitis: Role of histone H3 acetylation and microRNA(s) in the regulation of host inflammatory gene expression during Staphylococcus aureus infection

Author : Rahul Modak, Susweta Das Mitra, Madavan Vasudevan, Paramanandhan Krishnamoorthy, Manoj Kumar, Akshay V Bhat, Mani Bhuvana, Sankar K Ghosh, Bibek R Shome and Tapas K Kundu


PMID: 25075227


MicroarrayLinkJawaharlal Nehru Centre for Advanced Scientific ResearchCo-authorshipBioMed CentralGene Expression
2014Title :A draft genome assembly of the army worm, Spodoptera frugiperda

Author : Kakumani PK, Malhotra P, Mukherjee SK, Bhatnagar RK



PMID: 24984256


NGSLinkInternational Centre for Genetic Engineering and BiotechnologyAcknowledgementGenomicsDNA Seq
2013Title :Differential Expression of genes involved in the early events of spermatogenesis in mice

Author : Alhad Ashok Ketkar, KVR Reddy



PMID: NA


MicroarrayNational Institute for Research in Reproductive HealthAcknowledgementCell Science & TherapyGene Expression
2013Title : Decreased Pattern Recognition Receptor Signaling, Interferon-Signature, and Bactericidal/Permeability-Increasing Protein Gene Expression in Cord Blood of Term Low Birth Weight Human Newborns

Author : Vikas Vikram Singh, Sudhir Kumar Chauhan, Richa Rai, Ashok Kumar, Shiva M. Singh, Geeta Rai



PMID: 23626859


MicroarrayLinkBanaras Hindu UniversityAcknowledgementPLoS OneGene Expression
2013Title : Mitochondria influence CDR1 efflux pump activity, Hog1-mediated oxidative stress pathway, iron homeostasis, and ergosterol levels in Candida albicans.

Author : Thomas E, Roman E, Claypool S, Manzoor N, Pla J, Panwar SL.



PMID: 23979757


MicroarrayLinkJawaharlal Nehru UniversityAcknowledgementAntimicrobial Agents And ChemotherapyGene Expression
2013Title : RNAi Mediated Tiam1 Gene Knockdown Inhibits Invasion of Retinoblastoma

Author : Nithya Subramanian, Saranya Navaneethakrishnan, Jyotirmay Biswas, Rupinder K. Kanwar, Jagat R. Kanwar, Subramanian Krishnakumar


PMID: 23950931


MicroarrayLinkSankara NethralayaAcknowledgementPLoS OneGene Expression
2013Title : The interplay of HuR and miR-3134 in regulation of AU rich transcriptome

Author : Shivani Sharma, Suneer Verma, Madavan Vasudevan, Subhasis Samanta, Jitendra K Thakur, Ritu Kulshreshtha



PMID: 23823647


MicroarrayLinkIndian Institute of Technology DelhiCo-authorshipRNA BiologymiRNA
2013Title : Probing p300/CBP Associated Factor (PCAF)-Dependent Pathways with a Small Molecule Inhibitor

Author : Rahul Modak, Jeelan Basha, Narendra Bharathy, Koustav Maity, Pushpak Mizar, Akshay V. Bhat, Madavan Vasudevan, Vinay Kumar Rao, Wai Kay Kok, Nagashayana Natesh, Reshma Taneja and Tapas K. Kundu



PMID: 23570531


MicroarrayLinkJawaharlal Nehru Centre for Advanced Scientific ResearchCo-authorshipACS Chemical BiologyGene Expression
2013Title : Identification of tissue-preferential expression patterns of rice miRNAs

Author : Deepti Mittal, Sunil K. Mukherjee, Madavan Vasudevan and Neeti Sanan Mishra



PMID: 23553598


NGSLinkInternational Centre for Genetic Engineering and BiotechnologyCo-authorshipJournal Of Cellular Biochemistrysmall RNA
2013Title :Molecular Insights on Post-chemotherapy Retinoblastoma by Microarray Gene Expression Analysis

Author : Venkatesan Nalini, Ramya Segu, Perinkulam Ravi Deepa, Vikas Khetan, Madavan Vasudevan and Subramanian Krishnakumar



PMID: 24092970


MicroarrayLinkSankara NethralayaCo-authorshipBioinformatics and Biology InsightsGene Expression
2013Title : Nuclear factor (NF)-κB and its associated pathways are major molecular regulators of blood-induced joint damage in a murine model of hemophilia

Author : D. Sen,A. Chapla,N. Walter, A. Srivastava, G. R. Jayandharan



PMID: 23231432


MicroarrayLinkChristian Medical CollegeAcknowledgementJournal Of Thrombosis And Haemostasis : JTHGene Expression
2013Title : Identification and Insilico Analysis of Retinoblastoma Serum microRNA Profile and Gene Targets Towards Prediction of Novel Serum Biomarkers

Author : Madhu Beta, Nalini Venkatesan, Madavan Vasudevan, Umashankar Vetrivel, Vikas Khetan and Subramanian Krishnakumar



PMID: 23400111


MicroarrayLinkSankara NethralayaCo-authorshipBioinformatics and Biology InsightsmiRNA
2012Title : Microarray analysis and biochemical correlations of oxidative stress responsive genes in retinoblastoma

Author : Vandhana S, Lakshmi TS, Indra D, Deepa PR, Krishnakumar S.



PMID: 22668346


MicroarrayLinkSankara NethralayaAcknowledgementCurrent Eye ResearchGene Expression
2012Title:Gene expression profiles and retinal potential of stem/progenitor cells derived from human iris and ciliary pigment epithelium

Author : Jasty S, Srinivasan P, Pasricha G, Chatterjee N, Subramanian K.



PMID: 22744312


MicroarrayLinkSankara NethralayaAcknowledgementStem Cell ReviewsGene Expression
2012Title : Pyrosequencing-Based Transcriptome Analysis of the Asian Rice Gall Midge Reveals Differential Response during Compatible and Incompatible Interaction

Author : Deepak Kumar Sinha,Javaregowda Nagaraju, Archana Tomar, Jagadish S. Bentur, Suresh Nair



PMID: 23202939


NGSLinkInternational Centre for Genetic Engineering and BiotechnologyAcknowledgementInternational Journal of Molecular SciencesRNA Seq
2012Title: Histone H3K14 and H4K8 hyperacetylation is associated with Escherichia coli-induced mastitis in mice

Author: Modak R, Das Mitra S, Krishnamoorthy P, Bhat A, Banerjee A, Gowsica BR, Bhuvana M, Dhanikachalam V, Natesan K, Shome R, Shome BR, Kundu TK



PMID: 22419123



MicroarrayLinkJawaharlal Nehru Centre for Advanced Scientific Research, BangaloreAcknowledgementEpigeneticsGene Expression249000
2011Title : Chemical Biology Research in India C10

Author : B. Ruthrotha Selvi, Siddhartha Roy, Tapas K Kundu



PMID :22013965
NAJawaharlal Nehru Centre for Advanced Scientific ResearchAcknowledgementACS Chemical Biology