Publication

  • 77

    Publications

  • 38

    NGS

  • 39

    Microarray

  • 51

    Co-Authored

Year Wise Distribution

  • Co-Authored vs Acknowledged
  • Key Applications (NGS)

YEARTitleApplicationPubmed LinkInstitute NameCo-authorship/ Author/AcknowledgementJournal nameApplication subtype   
2018TITLE: Unraveling the role of aurora A beyond centrosomes and spindle assembly: implications in muscle differentiation.

Author: Dhanasekaran K, Bose A, Rao VJ, Boopathi R, Shankar SR, Rao VK, Swaminathan A, Vasudevan M, Taneja R, Kundu TK.

PMID: 29995440
MicroarrayLinkJawaharlal Nehru Centre for Advanced Scientific Research, Molecular Biology and Genetics UnitCo-AuthorshipThe Faseb JournalGene Expression
2018TITLE: Probiotics L. acidophilus and B. clausii Modulate Gut Microbiota in Th1- and Th2-Biased Mice to Ameliorate Salmonella Typhimurium-Induced Diarrhea.

Author: Pradhan B, Guha D, Naik AK, Banerjee A, Tambat S, Chawla S, Senapati S, Aich P.

PMID: 29909486
NGSLinkNational Institute of Science Education and Research (NISER), School of Biological SciencesCo-AuthorshipProbiotics and Antimicrobial ProteinsRNA Seq
2018TITLE: ARMOUR - A Rice miRNA: mRNA Interaction Resource.

Author: Sanan-Mishra N, Tripathi A, Goswami K, Shukla RN, Vasudevan M, Goswami H.

PMID: 29868062 | PMCID:PMC5952065
NGSLinkInternational Centre for Genetic Engineering and Biotechnology (ICGEB), Plant RNAi Biology GroupCo-AuthorshipFrontiers in Plant Sciencesmall RNA
2018TITLE: Comparative genomic analysis of a naturally competent Elizabethkingia anophelis isolated from an eye infection.

Author: Bulagonda EP, Manivannan B, Mahalingam N, Lama M, Chanakya PP, Khamari B, Jadhao S, Vasudevan M, Nagaraja V.

PMID: 29855598 | PMCID:PMC5981450
NGSLinkSri Sathya Sai Institute of Higher Learning, Department of Biosciences Co-AuthorshipNature Scientifica ReportsDNA Seq
2018TITLE: Publisher Correction: Co-expression network analysis of toxin-antitoxin loci in Mycobacterium tuberculosis reveals key modulators of cellular stress.

Author: Gupta A, Venkataraman B, Vasudevan M, Bankar KG.

PMID: 29748643 | PMCID:PMC5945647
MicroarrayLinkUniversity of Delhi South Campus, Department of MicrobiologyCo-AuthorshipNature Scientific ReportsGene Expression
2018TITLE: Biological and regulatory roles of acid-induced small RNA RyeC in Salmonella Typhimurium.

Author: Ryan D, Mukherjee M, Nayak R, Dutta R, Suar M.

PMID: 29730297
NGSLinkKIIT University, School of BiotechnologyCo-AuthorshipELSEVIER Biochimiesmall RNA
2018TITLE: Draft Genome Sequence of Multidrug-Resistant Escherichia coli NIVEDI-P44, Isolated from a Chicken Fecal Sample in Northeast India.

Author: Tewari R, Das Mitra S, Das S, Jadhao S, Mishra G, Ganaie F, Shome R, Rahman H, Shome BR.

PMID: 29700135 | PMCID:PMC5920187
NGSLinkICAR-National Institute of Veterinary Epidemiology and Disease Informatics, Co-AuthorshipMicrobiology Resource AnnouncementsDNA Seq
2018TITLE: Rudhira/BCAS3 is essential for mouse development and cardiovascular patterning.

Author: Shetty R, Joshi D, Jain M, Vasudevan M, Paul JC, Bhat G, Banerjee P, Abe T, Kiyonari H, VijayRaghavan K, Inamdar MS.

PMID: 29618843 | PMCID:PMC5884795
MicroarrayLinkJawaharlal Nehru Centre for Advanced Scientific ResearchCo-AuthorshipNature Scientific ReportsGene Expression
2018TITLE: p53 mediated regulation of coactivator associated arginine methyltransferase 1 (CARM1) expression is critical for suppression of adipogenesis.

Author: Behera AK, Bhattacharya A, Vasudevan M, Kundu TK.

PMID: 29575726
NGSLinkJawaharlal Nehru Centre for Advanced Scientific Research, Molecular Biology and Genetics UnitCo-AuthorshipThe FEBS JournalRNA Seq
2017TITLE: Characterization and Molecular Mechanism of Peptide-Conjugated Gold Nanoparticle Inhibiting p53-HDM2 Interaction in Retinoblastoma.

Author: Kalmodia S, Parameswaran S, Ganapathy K, Yang W, Barrow CJ, Kanwar JR, Roy K, Vasudevan M, Kulkarni K, Elchuri SV, Krishnakumar S.

PMID: 29246314 | PMCID:PMC5684491
MicroarrayLinkVision Research Foundation, Department of Nano Biotechnology; Deakin University, Centre for Chemistry and BiotechnologyCo-AuthorshipMolecular Therapy Nucleic AcidsGene Expression
2017TITLE: Global microRNA expression profiling in the liver biopsies of hepatitis B virus-infected patients suggests specific microRNA signatures for viral persistence and hepatocellular injury.

Author: Singh AK, Rooge SB, Varshney A, Vasudevan M, Bhardwaj A, Venugopal SK, Trehanpati N, Kumar M, Geffers R, Kumar V, Sarin SK.

PMID: 29194684
MicroarrayLinkInstitute of Liver and Biliary Sciences (ILBS), Department of Molecular and Cellular Medicine, Co-AuthorshipHepatologyGene Expression
2017TITLE: Draft Genome Sequence of Rhizoctonia solani Anastomosis Group 1 Subgroup 1A Strain 1802/KB Isolated from Rice.

Author: Nadarajah K, Mat Razali N, Cheah BH, Sahruna NS, Ismail I, Tathode M, Bankar K.

PMID: 29074665 | PMCID:PMC5658503
NGSLinkUniversiti Kebangsaan Malaysia, School of Environmental and Natural Resource SciencesCo-AuthorshipMicrobiology Resource AnnouncementsDNA Seq
2017TITLE: Identification of functionally important microRNAs from rice inflorescence at heading stage of a qDTY4.1-QTL bearing Near Isogenic Line under drought conditions.

Author: Cheah BH, Jadhao S, Vasudevan M, Wickneswari R, Nadarajah K.

PMID: 29045473 | PMCID:PMC5647096
NGSLinkUniversiti Kebangsaan Malaysia, School of Environmental and Natural Resource SciencesCo-AuthorshipPLoS Onesmall RNA
2017TITLE: Co-expression network analysis of toxin-antitoxin loci in Mycobacterium tuberculosis reveals key modulators of cellular stress.

Author: Gupta A, Venkataraman B, Vasudevan M, Gopinath Bankar K.

PMID: 28724903 | PMCID:PMC5517426
MicroarrayLinkUniversity of Delhi South Campus, Department of MicrobiologyCo-AuthorshipNature Scientific ReportsGene Expression
2017TITLE: miRNA signatures can predict acute liver failure in hepatitis E infected pregnant females.

Author: Trehanpati N, Sehgal R, Patra S, Vyas A, Vasudevan M, Khosla R, Khanam A, Kumar G, Maiwall R, Ramakrishna G, Kottilil S, Sarin SK.

PMID: 28413835 | PMCID:PMC5384411
NGSLinkILBS, Department of molecular & Cellular MedicineCo-AuthorshipElsevier Heliyonsmall RNA
2017TITLE: Interaction of a common painkiller piroxicam and copper-piroxicam with chromatin causes structural alterations accompanied by modulation at the epigenomic/genomic level.

Author: Goswami S, Sanyal S, Chakraborty P, Das C, Sarkar M.

PMID: 28411076
MicroarrayLinkSaha Institute of Nuclear PhysicsCo-AuthorshipBiochimica et Biophysica Acta (BBA) - General SubjectsGene Expression
2017TITLE: Gene regulatory networking reveals the molecular cue to lysophosphatidic acid-induced metabolic adaptations in ovarian cancer cells.

Author: Ray U, Roy Chowdhury S, Vasudevan M, Bankar K, Roychoudhury S, Roy SS.

PMID: 28236660 | PMCID:PMC5527468
NGSLinkIICB, Cell Biology and Physiology DivisionCo-authorshipMolecular OnclogyRNA Seq
2017TITLE: EpCAM+ Liver Cancer Stem-Like Cells Exhibiting Autocrine Wnt Signaling Potentially Originate in Cirrhotic Patients.

Author: Khosla R, Rastogi A, Ramakrishna G, Pamecha V, Mukhopadhyay A, Vasudevan M, Sarin SK, Trehanpati N.

PMID: 28176469 | PMCID:PMC5442787
NGSLinkILBS, Department of molecular & Cellular MedicineCo-authorshipStem Cell Translational MedicineRNA Seq
2017TITLE: Age-related changes in gene expression patterns of immature and aged rat primordial follicles.

Author: Govindaraj V, Krishnagiri H, Chakraborty P, Vasudevan M, Rao AJ.

PMID: 28045561
MicroarrayLinkIISc, Department of BiochemistryCo-authorshipTaylore & Francis OnlineGene Expression
2017TITLE: Alternate splicing of transcripts shape macrophage response to Mycobacterium tuberculosis infection.

Author: Kalam H, Fontana MF, Kumar D.

PMID: 29300790
NGSLinkInternational Centre for Genetic Engineering and Biotechnology, Cellular Immunology GroupCo-authorshipPLos - PathogensRNA Seq
2016TITLE: Transcriptional changes during ovule development in two genotypes of litchi (Litchi chinensis Sonn.) with contrast in seed size.

Author: Pathak AK, Singh SP, Gupta Y, Gurjar AK, Mantri SS, Tuli R.

PMID: 27824099 | PMCID:PMC5099886
NGSLinkNational Agri-Food Biotechnology InstituteAcknowledgementNature- Scientific ReportsRNA Seq
2016TITLE: P/CAF mediates PAX3-FOXO1-dependent oncogenesis in alveolar rhabdomyosarcoma.

Author: Bharathy N, Suriyamurthy S, Rao VK, Ow JR, Lim HJ, Chakraborty P, Vasudevan M, Dhamne CA, Chang KT, Min VL, Kundu TK, Taneja R.

PMID: 27453350
MicroarrayLinkMolecular Biology and Genetics Unit, Jawaharlal Nehru Centre for Advanced Scientific Research, BangaloreCo-authorshipThe Journal of PathologyGene Expression
2016TITLE: Transcriptome Analysis of the Response to NaCl in Suaeda maritima Provides an Insight into Salt Tolerance Mechanisms in Halophytes.

Author: Gharat SA, Parmar S, Tambat S, Vasudevan M, Shaw BP.

PMID: 27682829 | PMCID:PMC5040429
NGSLinkILS BhubaneswarCo-authorshipPLoS OneRNA Seq
2016Title: De novo Assembly of Leaf Transcriptome in the Medicinal Plant Andrographis paniculata

Author: Cherukupalli N, Divate M, Mittapelli SR, Khareedu VR, Vudem DR.

27582746
NGSLinkCentre for Plant Molecular Biology, Osmania University, HyderabadCo-authorshipFrontiers in Plant ScienceRNA Seq
2016TITLE: Nucleolin-aptamer therapy in retinoblastoma: molecular changes and mass spectrometry-based imaging.

Author: Subramanian N, Srimany A, Kanwar JR, Kanwar RK, Akilandeswari B, Rishi P, Khetan V, Vasudevan M, Pradeep T, Krishnakumar S.

PMID: 27574784 | PMCID:PMC5023409
MicroarrayLinkVision Research FoundationCo-authorship"Molecular Therapy- Nucleic Acid
(Nature)"
Gene Expression
2016TITLE: The plant alkaloid chelerythrine binds to chromatin, alters H3K9Ac and modulates global gene expression.

Author: Banerjee A, Sanyal S, Dutta S, Chakraborty P, Das PP, Jana K, Vasudevan M, Das C, Dasgupta D.

PMID: 27494525
MicroarrayLinkBiophysics and Structural Genomics Division, Saha Institute of Nuclear PhysicsCo-authorshipJournal of Biomolecular Structure and DynamicsGene Expression
2016TITLE: Notch1-MAPK Signaling Axis Regulates CD133(+) Cancer Stem Cell-Mediated Melanoma Growth and Angiogenesis.

Author: Kumar D, Kumar S, Gorain M, Tomar D, Patil HS, Radharani NNV, Kumar TVS, Patil TV, Thulasiram HV, Kundu GC.

PMID: 27476721
MicroarrayLinkLaboratory of Tumor Biology, Angiogenesis and Nanomedicine Research, National Centre for Cell Science (NCCS)AcknowledgementJournal of Investigative DermatologyGene Expression
2016TITLE: Draft Genome Sequence of Acinetobacter sp. Strain BMW17, a Cellulolytic and Plant Growth-Promoting Bacterium Isolated from the Rhizospheric Region of Phragmites karka of Chilika Lake, India.

Author: Mishra SR, Ray L, Panda AN, Sahu N, Xess SS, Jadhao S, Suar M, Adhya TK, Rastogi G, Pattnaik AK, Raina V.

PMID: 27365343 | PMCID:PMC4929506
NGSLinkSchool of Biotechnology, KIIT University, BhubaneswarCo-authorshipGenome AnnouncementsDNA Seq
2016TITLE: Draft Genome Sequence of Halobacillus sp. Strain KGW1, a Moderately Halophilic and Alkaline Protease-Producing Bacterium Isolated from the Rhizospheric Region of Phragmites karka from Chilika Lake, Odisha, India.

Author: Panda AN, Mishra SR, Ray L, Sahu N, Acharya A, Jadhao S, Suar M, Adhya TK, Rastogi G, Pattnaik AK, Raina V.

PMID: 27365341 | PMCID:PMC4929504
NGSLinkSchool of Biotechnology, KIIT University, Bhubaneswar, Odisha, India.Co-authorshipGenome AnnouncementsDNA Seq
2016TITLE: Draft Genome Sequence of Pseudomonas sp. Strain BMS12, a Plant Growth-Promoting and Protease-Producing Bacterium, Isolated from the Rhizosphere Sediment of Phragmites karka of Chilika Lake, India.

Author: Mishra SR, Panda AN, Ray L, Sahu N, Mishra G, Jadhao S, Suar M, Adhya TK, Rastogi G, Pattnaik AK, Raina V.

PMID: 27365340 | PMCID:PMC4929503
NGSLinkSchool of Biotechnology, KIIT University, BhubaneswarCo-authorshipGenome AnnouncementsDNA Seq
2016TITLE: Streptococcus uberis ST439 and ST475 induce differential inflammatory responses in a mouse intramammary infection model.

Author: Mitra SD, Shome BR, Mani B, Velu D, Banerjee A, Bankar K, Ghosh SK, Santra S, Suresh KP, Rahman H.

PMID: 27039025
NGSLinkICAR-National Institute of Veterinary Epidemiology and Disease Informatics (NIVEDI)Co-authorshipGENEDNA Seq
2016TITLE: Draft Genome Sequence of a Clinically Isolated Extensively Drug-Resistant Pseudomonas aeruginosa Strain.

Author: Manivannan B, Mahalingam N, Jadhao S, Mishra A, Nilawe P, Pradeep BE.

PMID: 27013045 | PMCID:PMC4807234
NGSLinkSri Sathya Sai Institute of Higher Learning, Prasanthi NilayamCo-authorshipGenome AnnouncementsDNA Seq
2016TITLE: Draft Genome Sequences of Two Extensively Drug-Resistant Acinetobacter baumannii Strains Isolated from Pus Samples.

Author: Mahalingam N, Manivannan B, Jadhao S, Mishra G, Nilawe P, Pradeep BE.

PMID: 27013044 | PMCID:PMC4807233
NGSLinkSri Sathya Sai Institute of Higher Medical Sciences (Prasanthigram)Co-authorshipGenome AnnouncementsDNA Seq
2016TITLE: Draft Genome Sequence of Alcaligenes faecalis Strain IITR89, an Indole-Oxidizing Bacterium.

Author: Regar RK, Gaur VK, Mishra G, Jadhao S, Kamthan M, Manickam N.

PMID: 26941148 | PMCID:PMC4777759
NGSLinkCSIR-Indian Institute of Toxicology Research (IITR)Co-authorshipGenome AnnouncementsDNA Seq
2016TITLE: Draft Genome Sequence of Acinetobacter baumannii IITR88, a Bacterium Degrading Indoles and Other Aromatic Compounds.

Author: Regar RK, Gaur VK, Mishra G, Jadhao S, Kamthan M, Manickam N.

PMID: 26941147 | PMCID:PMC4777758
NGSLinkCSIR-Indian Institute of Toxicology Research (IITR)Co-authorshipGenome AnnouncementsDNA Seq
2016TITLE: Gene expression profiling reveals Nef induced deregulation of lipid metabolism in HIV-1 infected T cells.

Author: Shrivastava S, Trivedi J, Mitra D.

PMID: 26915805
MicroarrayLinkNational Centre for Cell Science(Pune)AcknowledgementBiochemical and Biophysical Research CommunicationsGene Expression
2016TITLE: Clinico-Pathological Association of Delineated miRNAs in Uveal Melanoma with Monosomy 3/Disomy 3 Chromosomal Aberrations.

Author: Venkatesan N, Kanwar J, Deepa PR, Khetan V, Crowley TM, Raguraman R, Sugneswari G, Rishi P, Natarajan V, Biswas J, Krishnakumar S.

PMID: 26812476 | PMCID:PMC4728065
MicroarrayLinkSankara NethralayaAcknowledgementPLoS OnemiRNA
2015TITLE: Mycobacterium tuberculosis WhiB3 Responds to Vacuolar pH-induced Changes in Mycothiol Redox Potential to Modulate Phagosomal Maturation and Virulence.

Author: Mehta M, Rajmani RS, Singh A.

PMID: 26637353 | PMCID:PMC4742752
MicroarrayLinkIndian Institute of ScienceAcknowledgementThe Journal of Biological ChemistryGene Expression
2015TITLE: Inhibition of p300 lysine acetyltransferase activity by luteolin reduces tumor growth in head and neck squamous cell carcinoma (HNSCC) xenograft mouse model.

Author: Selvi RB, Swaminathan A, Chatterjee S, Shanmugam MK, Li F, Ramakrishnan GB, Siveen KS, Chinnathambi A, Zayed ME, Alharbi SA, Basha J, Bhat A, Vasudevan M, Dharmarajan A, Sethi G, Kundu TK.

PMID: 26517526 | PMCID:PMC4791268
MicroarrayLinkJawaharlal Nehru Centre for Advanced Scientific ResearchCo-authorshipOncotargetmiRNA
2015TITLE: Esophageal Cancer Epigenomics and Integrome Analysis of Genome-Wide Methylation and Expression in High Risk Northeast Indian Population.

Author: Singh V, Singh LC, Vasudevan M, Chattopadhyay I, Borthakar BB, Rai AK, Phukan RK, Sharma J, Mahanta J, Kataki AC, Kapur S, Saxena S.

PMID: 26496483
MicroarrayLinkNational Institute of Pathology (ICMR) , New DelhiCo-authorshipOMICSMethylation / Gene Expression / Integrome
2015TITLE: Ameliorated de novo transcriptome assembly using Illumina paired end sequence data with Trinity Assembler.

Author: Bankar KG, Todur VN, Shukla RN, Vasudevan M.

PMID: 26484285 | PMCID:PMC4583709
NGSLinkBionividAuthorGenomics DataRNA Seq
2015TITLE: Global gene expression profiling data analysis reveals key gene families and biological processes inhibited by Mithramycin in sarcoma cell lines.

Author: Kulkarni KK, Bankar KG, Shukla RN, Das C, Banerjee A, Dasgupta D, Vasudevan M.

PMID: 26484141 | PMCID:PMC4535529
MicroarrayLinkBionivid Technology Pvt Ltd., BangaloreAuthorGenomics DataGene Expression
2015TITLE: Identification of four functionally important microRNA families with contrasting differential expression profiles between drought-tolerant and susceptible rice leaf at vegetative stage.

Author: Cheah BH, Nadarajah K, Divate MD, Wickneswari R.

PMID: 26369665 | PMCID:PMC4570225
MicroarrayLinkSchool of Biotechnology and Bioscience, Faculty of Science and Technology, Universiti Kebangsaan MalaysiaCo-authorshipBioMed CentralmiRNA
2015TITLE: De novo transcriptome assembly and analysis of Sf21 cells using illumina paired end sequencing.

Author: Kakumani PK, Shukla R, Todur VN, Malhotra P, Mukherjee SK, Bhatnagar RK.

PMID: 26290335 | PMCID:PMC4545970
NGSLinkInternational Centre for Genetic Engineering and BiotechnologyCo-authorshipBioMed CentralRNA Seq
2015TITLE: Dengue NS3, an RNAi suppressor, modulates the human miRNA pathways through its interacting partner.

Author: Kakumani PK, Rajgokul KS, Ponia SS, Kaur I, Mahanty S, Medigeshi GR, Banerjea AC, Chopra AP, Malhotra P, Mukherjee SK, Bhatnagar RK.

PMID: 26221025
NGSLinkInternational Centre for Genetic Engineering and BiotechnologyAcknowledgementBiochemical Journalsmall RNA
2015TITLE: Computational and in vitro Investigation of miRNA-Gene Regulations in Retinoblastoma Pathogenesis: miRNA Mimics Strategy.

Author: Venkatesan N, Deepa PR, Khetan V, Krishnakumar S.

PMID: 25983556 | PMCID:PMC4429751
NGSLinkSankara NethralayaAcknowledgementBioinformatics and Biology Insightssmall RNA
2015TITLE: De Novo Assembly and Characterization of Stress Transcriptome in a Salinity-Tolerant Variety CS52 of Brassica juncea.

Author: Sharma R, Mishra M, Gupta B, Parsania C, Singla-Pareek SL, Pareek A.

PMID: 25970274 | PMCID:PMC4429966
NGSLinkJawaharlal Nehru UniversityCo-authorshipPLoS OneRNA Seq
2015TITLE: Recognition of chromatin by the plant alkaloid, ellipticine as a dual binder.

Author: Banerjee A, Sanyal S, Majumder P, Chakraborty P, Jana K, Das C, Dasgupta D.

PMID: 25960297
MicroarrayLinkSaha Institute of Nuclear PhysicsCo-authorshipBiochemical and Biophysical Research CommunicationsGene Expression
2015TITLE: Global gene deregulations in FASN silenced retinoblastoma cancer cells: molecular and clinico-pathological correlations.

Author: Sangeetha M, Deepa PR, Rishi P, Khetan V, Krishnakumar S.

PMID: 25958981
MicroarrayLinkBirla Institute of Technology and ScienceAcknowledgementJournal of Cellular BiochemistrGene Expression
2015TITLE: Exploring triacylglycerol biosynthetic pathway in developing seeds of Chia (Salvia hispanica L.): a transcriptomic approach.

Author: R V S, Kumari P, Rupwate SD, Rajasekharan R, Srinivasan M.

PMID: 25875809 | PMCID:PMC4395390
NGSLinkCentral Food Technological Research InstituteAcknowledgementPLoS OneRNA Seq
2015TITLE: Identification and characteristics of microRNAs from army worm, Spodoptera frugiperda cell line Sf21.

Author: Kakumani PK, Chinnappan M, Singh AK, Malhotra P, Mukherjee SK, Bhatnagar RK.

PMID: 25693181 | PMCID:PMC4333348
NGSLinkInternational Center for Genetic Engineering and BiotechnologyAcknowledgementPLoS Onesmall RNA
2015TITLE: Global insights into high temperature and drought stress regulated genes by RNA-Seq in economically important oilseed crop Brassica juncea.

Author: Bhardwaj AR, Joshi G, Kukreja B, Malik V, Arora P, Pandey R, Shukla RN, Bankar KG, Katiyar-Agarwal S, Goel S, Jagannath A, Kumar A, Agarwal M.

PMID: 25604693 | PMCID:PMC4310166
NGSLinkUniversity of DelhiCo-authorshipBMC Plant BiologyRNA Seq
2014TITLE: Temporal expression profiling of novel Spodoptera litura nucleopolyhedrovirus-encoded microRNAs upon infection of Sf21 cells.

Author: Kharbanda N, Jalali SK, Ojha R, Bhatnagar RK.

PMID: 25481752
NGSLinkInternational Center for Genetic Engineering and BiotechnologyAcknowledgementJournal of General Virologysmall RNA
2014TITLE: Anticancer drug mithramycin interacts with core histones: An additional mode of action of the DNA groove binder.

Author: Banerjee A, Sanyal S, Kulkarni KK, Jana K, Roy S, Das C, Dasgupta D.

PMID: 25473595 | PMCID:PMC4247356
MicroarrayLinkSaha Institute of Nuclear PhysicsCo-authorshipFEBS OpenbioGene Expression
2014TITLE: CARM1 regulates astroglial lineage through transcriptional regulation of Nanog and posttranscriptional regulation by miR92a.

Author: Selvi BR, Swaminathan A, Maheshwari U, Nagabhushana A, Mishra RK, Kundu TK.

PMID: 25392304 | PMCID:PMC4294678
MicroarrayLinkJawaharlal Nehru Centre for Advanced Scientific ResearchAcknowledgementMolecular Biology of The CellmiRNA
2014TITLE: Integrated Analysis of Dysregulated miRNA-gene Expression in HMGA2-silenced Retinoblastoma Cells.

Author: Venkatesan N, Deepa P, Vasudevan M, Khetan V, Reddy AM, Krishnakumar S.

PMID: 25232279 | PMCID:PMC4159370
MicroarrayLinkSankara NethralayaCo-authorshipBioinformatics and Biology InsightsGene Expression
2014TITLE: Genome wide screening of RNAi factors of Sf21 cells reveal several novel pathway associated proteins.

Author: Ghosh S, Kakumani PK, Kumar A, Malhotra P, Mukherjee SK, Bhatnagar RK.

PMID: 25199785 | PMCID:PMC4247154
NGSLinkInternational Centre for Genetic Engineering and BiotechnologyAcknowledgementBioMed Centralsmall RNA
2014TITLE: Dramatic changes in 67 miRNAs during initiation of first wave of spermatogenesis in Mus musculus testis: global regulatory insights generated by miRNA-mRNA network analysis.

Author: Sree S, Radhakrishnan K, Indu S, Kumar PG.

PMID: 25122060
MicroarrayLinkRajiv Gandhi Center for BiotechnologyAcknowledgementBiology of ReproductionmiRNA
2014TITLE: Epigenetic response in mice mastitis: Role of histone H3 acetylation and microRNA(s) in the regulation of host inflammatory gene expression during Staphylococcus aureus infection.

Author: Modak R, Das Mitra S, Vasudevan M, Krishnamoorthy P, Kumar M, Bhat AV, Bhuvana M, Ghosh SK, Shome BR, Kundu TK.

PMID: 25075227 | PMCID:PMC4114167
MicroarrayLinkJawaharlal Nehru Centre for Advanced Scientific ResearchCo-authorshipBioMed CentralGene Expression
2014TITLE: A draft genome assembly of the army worm, Spodoptera frugiperda.

Author: Kakumani PK, Malhotra P, Mukherjee SK, Bhatnagar RK.

PMID: 24984256
NGSLinkInternational Centre for Genetic Engineering and BiotechnologyAcknowledgementGenomicsDNA Seq
2014TITLE: Gene expression analysis of laminin-1-induced neurite outgrowth in human mesenchymal stem cells derived from bone marrow.

Author: Mruthyunjaya S, Parveen D, Shah RD, Manchanda R, Godbole R, Vasudevan M, Shastry P.

PMID: 24866321
MicroarrayLinkNational Centre for Cell ScienceCo-authorshipJournal Of Biomedical Materials Research. Part AGene Expression
2014TITLE: De novo transcriptome sequencing and analysis of the cereal cyst nematode, Heterodera avenae.

Author: Kumar M, Gantasala NP, Roychowdhury T, Thakur PK, Banakar P, Shukla RN, Jones MG, Rao U.

PMID: 24802510 | PMCID:PMC4011697
NGSLinkIndian Agricultural Research InstituteCo-authorshipPLoS OneRNA Seq
2013TITLE: A new microarray platform for whole-genome expression profiling of Mycobacterium tuberculosis.

Author: Venkataraman B, Vasudevan M, Gupta A.

PMID: 24365110
MicroarrayLinkUniversity of Delhi South CampusCo-authorshipJournal Of Microbiological MethodsGene Expression
2013TITLE: Molecular Insights on Post-chemotherapy Retinoblastoma by Microarray Gene Expression Analysis.

Author: Nalini V, Segu R, Deepa PR, Khetan V, Vasudevan M, Krishnakumar S.

PMID: 24092970 | PMCID:PMC3785389
MicroarrayLinkSankara NethralayaCo-authorshipBioinformatics and Biology InsightsGene Expression
2013TITLE: Mitochondria influence CDR1 efflux pump activity, Hog1-mediated oxidative stress pathway, iron homeostasis, and ergosterol levels in Candida albicans.

Author: Thomas E, Roman E, Claypool S, Manzoor N, Pla J, Panwar SL.

PMID: 23979757 | PMCID:PMC3811284
MicroarrayLinkJawaharlal Nehru UniversityAcknowledgementAntimicrobial Agents And ChemotherapyGene Expression
2013TITLE: RNAi mediated Tiam1 gene knockdown inhibits invasion of retinoblastoma.

Author: Subramanian N, Navaneethakrishnan S, Biswas J, Kanwar RK, Kanwar JR, Krishnakumar S.

PMID: 23950931 | PMCID:PMC3737373
MicroarrayLinkSankara NethralayaAcknowledgementPLoS OneGene Expression
2013TITLE: The interplay of HuR and miR-3134 in regulation of AU rich transcriptome.

Author: Sharma S, Verma S, Vasudevan M, Samanta S, Thakur JK, Kulshreshtha R.

PMID: 23823647 | PMCID:PMC3817149
MicroarrayLinkIndian Institute of Technology DelhiCo-authorshipRNA BiologymiRNA
2013TITLE: Decreased pattern recognition receptor signaling, interferon-signature, and bactericidal/permeability-increasing protein gene expression in cord blood of term low birth weight human newborns.

Author: Singh VV, Chauhan SK, Rai R, Kumar A, Singh SM, Rai G.

PMID: 23626859 | PMCID:PMC3633842
MicroarrayLinkBanaras Hindu UniversityAcknowledgementPLoS OneGene Expression
2013TITLE: Probing p300/CBP associated factor (PCAF)-dependent pathways with a small molecule inhibitor.

Author: Modak R, Basha J, Bharathy N, Maity K, Mizar P, Bhat AV, Vasudevan M, Rao VK, Kok WK, Natesh N, Taneja R, Kundu TK.

PMID: 23570531
MicroarrayLinkJawaharlal Nehru Centre for Advanced Scientific ResearchCo-authorshipACS Chemical BiologyGene Expression
2013TITLE: Identification of tissue-preferential expression patterns of rice miRNAs.

Author: Mittal D, Mukherjee SK, Vasudevan M, Mishra NS.

PMID: 23553598
NGSLinkInternational Centre for Genetic Engineering and BiotechnologyCo-authorshipJournal Of Cellular Biochemistrysmall RNA
2013TITLE: Identification and Insilico Analysis of Retinoblastoma Serum microRNA Profile and Gene Targets Towards Prediction of Novel Serum Biomarkers.

Author: Beta M, Venkatesan N, Vasudevan M, Vetrivel U, Khetan V, Krishnakumar S.

PMID: 23400111 | PMCID:PMC3547501
MicroarrayLinkSankara NethralayaCo-authorshipBioinformatics and Biology InsightsmiRNA
2012TITLE: Nuclear factor (NF)-ム_B and its associated pathways are major molecular regulators of blood-induced joint damage in a murine model of hemophilia.

Author: Sen D, Chapla A, Walter N, Daniel V, Srivastava A, Jayandharan GR.

PMID: 23231432
MicroarrayLinkChristian Medical CollegeAcknowledgementJournal Of Thrombosis And Haemostasis : JTHGene Expression
2012TITLE: Pyrosequencing-based transcriptome analysis of the asian rice gall midge reveals differential response during compatible and incompatible interaction.

Author: Sinha DK, Nagaraju J, Tomar A, Bentur JS, Nair S.

PMID: 23202939 | PMCID:PMC3497313
NGSLinkInternational Centre for Genetic Engineering and BiotechnologyAcknowledgementInternational Journal of Molecular SciencesRNA Seq
2012TITLE: Gene expression profiles and retinal potential of stem/progenitor cells derived from human iris and ciliary pigment epithelium.

Author: Jasty S, Srinivasan P, Pasricha G, Chatterjee N, Subramanian K.

PMID: 22744312
MicroarrayLinkSankara NethralayaAcknowledgementStem Cell ReviewsGene Expression
2012TITLE: Microarray analysis and biochemical correlations of oxidative stress responsive genes in retinoblastoma.

Author: Vandhana S, Lakshmi TS, Indra D, Deepa PR, Krishnakumar S.

PMID: 22668346
MicroarrayLinkSankara NethralayaAcknowledgementCurrent Eye ResearchGene Expression
2012TITLE: Histone H3K14 and H4K8 hyperacetylation is associated with Escherichia coli-induced mastitis in mice.

Author: Modak R, Das Mitra S, Krishnamoorthy P, Bhat A, Banerjee A, Gowsica BR, Bhuvana M, Dhanikachalam V, Natesan K, Shome R, Shome BR, Kundu TK.

PMID: 22419123
MicroarrayLinkJawaharlal Nehru Centre for Advanced Scientific Research, BangaloreAcknowledgementEpigeneticsGene Expression
2011TITLE: Chemical biology research in India.

Author: Selvi BR, Roy S, Kundu TK.

PMID: 22013965
NGSLinkJawaharlal Nehru Centre for Advanced Scientific ResearchAcknowledgementACS Chemical BiologyReview